ID: 1979
/ Poster - 52 Time-resolved: 1
Poster session abstracts
Poster
Poster session abstracts
Radomír Kužel
ID: 452
/ Poster - 52 Time-resolved: 2
Bursary application
Poster
MS: Time-resolved phase evolution, interaction & crystallization in soft matter: Integrative approachesPosters only: Crystallographic analysis of films and surfacesKeywords: Protein Crystallization, SAXS, SANS, Langmuir films, XSW
The organization of stable pre-crystallization phase from oligomers in lysozyme solution with different precipitates and the thin films formation at the air-liquid/air-substrate interfaces from the crystallization solutions
Margarita Marchenkova1, Kseniia Ilina1, Anastasiia Boikova1, Petr Konarev1, Alexey Seregin2, Yulia Dyakova2, Yury Pisarevskiy1, Mikhail Kovalchuk2
1Shubnikov Institute of Crystallography of Federal Scientific Research Centre “Crystallography and Photonics” of Russian Academy of Sciences; 2National Research Centre “Kurchatov Institute”
Bibliography
1.A.V. Kazak, M.A. Marchenkova, T.V. Dubinina, A.I. Smirnova, L.G. Tomilova, A.V. Rogachev, D.N. Chausov, A.A. Stsiapanau, N.V. Usol’tseva. Self-organization of octa-phenyl-2,3-naphthalocyaninato zinc floating layers. New journal of chemistry. 2020. Vol. 44. P. 3833-3837 (IF 3.069, DOI: 10.1039/C9NJ06041C, Q1)
2.A.V. Kazak, M.A. Marchenkova, A.I. Smirnova, A.Yu. Seregin, A.V. Rogachev, J. Warias, B. Murphy, E.Yu. Tereschenko, N.V. Usol’tseva. Floating layer structure of mesogenic phthalocyanine of A3B-type. Mendeleev communications. 2020. Vol. 30. № 2. P. 52-54 (IF 2.010, DOI: 10.1016/j.mencom.2020.01.017, Q2)
3.M.A. Marchenkova, I.P. Kuranova, V.I. Timofeev, A.S. Boikova, P.V. Dorovatovskii, Y.A. Dyakova, K.B. Ilina, Y.V. Pisarevskiy, M.V. Kovalchuk. The binding of precipitant ions in the tetragonal crystals of hen egg white lysozyme. Journal of Biomolecular Structure and Dynamics. 2019. Dec 6: 1-13 (IF 3.31 DOI: 10.1080/07391102.2019.1696706, Q2)
4.A. Smirnova, A. Kazak, M. Kovaleva, M. Marchenkova, A. Rogachev, D. N. Chausov, E. Glukhovskoy, N. Usol'tseva. BAM and GID structural investigation of 1,4,8,11,15,18-hexahexyloxy-22,23,24,25-tetrachlorophthalocyanine floating layers. Journal of Physics: Conference Series. 2019. Vol. 1309. P. 012023 (IF 0.69 DOI: 10.1088/1742-6596/1309/1/012024, Q3)
5.M.V. Kovalchuk, A.S. Boikova, Y.A. Dyakova, K.B. Ilina, P.V. Konarev, M.A. Marchenkova, P.A. Prosekov, A.V. Rogachev, A.Yu. Seregin. Structural characteristics of lysozyme Langmuir layers grown on a liquid surface from an oligomeric mixture formed in the early stages of lysozyme crystallization. Thin Solid Films. 2019. Vol. 677. P. 13-21 (IF 1.888, DOI: 10.1016/j.tsf.2019.02.051, Q2)
6.A.M. Popov, A.S. Boikova, V.V. Volkov, Yu.A. Dyakova, K.B. Ilina, P.V. Konarev, M.A. Marchenkova, G.S. Peters, Yu.V. Pisarevsky, M.V. Kovalchuk. Microfluidic Cell for Studying the Precrystallization Stage Structure of Protein Solutions by Small-Angle X-Ray Scattering. Crystallography Reports. 2018. Vol. 63. № 5. P. 713–718 (IF 0.751, DOI: 10.1134/S0023476118050235, Q2)
7.A.S. Boikova, Y.A. Dyakova, K.B. Ilina, P.V. Konarev, A.E. Kryukova, A.I. Kuklin, M.A. Marchenkova, B.V. Nabatov, A.E. Blagov, Y.V. Pisarevsky, M.V. Kovalchuk. Octamer formation in lysozyme solutions at the initial crystallization stage detected by small-angle neutron scattering. Acta Crystallographica Section D. 2017. D73. P. 591–599 (IF 3.227, DOI: 10.1107/S2059798317007422, Q1)
8.M.V. Kovalchuk, A.S. Boikova, Yu.A. Dyakova, M.A. Marchenkova, A.M. Opolchentsev, Yu.V. Pisarevsky, P.A. Prosekov, A.Yu. Seregin. Modification of the Langmuir–Schaefer Method for Fabrication of Ordered Protein Films. Crystallography Reports. 2017. Vol. 62. №4. P. 632–638 (IF 0.751, DOI: 10.1134/S1063774517040125, Q2)
9.M.V. Kovalchuk, A.E. Blagov, Y.A. Dyakova, A.Y. Gruzinov, M.A. Marchenkova, G.S. Peters, Y.V. Pisarevsky, V.I. Timofeev, V.V. Volkov. Investigation of the initial crystallization stage in lysozyme solutions by small-angle X-ray scattering. Crystal Growth & Design. 2016. Vol. 16. № 4. P. 1792-1797 (IF 4.153, DOI: 10.1021/acs.cgd.5b01662, Q1)
10.Y.A. Dyakova, M.A. Marchenkova, A.Y. Seregin, L.R. Imamova, E.Y. Tereschenko, V.V. Klechkovskaya, M.V. Kovalchuk, A.S. Alekseev. Orientation of donor-acceptor dyad molecules in Langmuir-Schaefer monolayers revealed by X-ray reflectometry. Mendeleev communications. 2016. Vol. 26. № 2. P. 149-151 (IF 2.010, DOI: 10.1016/j.mencom.2016.03.023, Q2)
11.А.V. Kazаk, N.V. Usol’tseva, A.I. Smirnova, Yu.А. Dyakova, М.А. Маrchenkova, B.V. Nabatov, Е.Yu. Tereschenko, I.V. Kholodkov. Optical properties and supramolecular organization of mix-substituted phthalocyanine holmium complex in Langmuir-Schaefer films. Macroheterocycles. 2015. Vol. 8. № 3. P. 284-289 (IF 1.086, DOI: 10.6060/mhc150972k, Q3)
12.M.A. Marchenkova, Y.A. Dyakova, E.Y. Tereschenko, M.V. Kovalchuk, Y.A. Vladimirov. The cytochrome c complexes with cardiolipin monolayer formed under different surface pressure. Langmuir. 2015. Vol. 31. № 45. P. 12426-12436 (IF 3.683, DOI: 10.1021/acs.langmuir.5b03155, Q1)
ID: 454
/ Poster - 52 Time-resolved: 3
Bursary application
Poster
MS: Time-resolved phase evolution, interaction & crystallization in soft matter: Integrative approachesPosters only: Macromolecular and biological crystallography (if it does not fit to any specific topics)Keywords: Protein Oligomers, Protein solution, Protein Crystallization, Crystal Growth, SAXS
The formation of pre-crystallization oligomers in protein solutions during crystal growth
Kseniia Ilina1, Anastasiia Boikova1, Margarita Marchenkova1, Yury Pisarevskiy1, Yuliia Dyakova2, Mikhail Kovalchuk2
1Shubnikov Institute of Crystallography of Federal Scientific Research Centre “Crystallography and Photonics” of Russian Academy of Sciences; 2National Research Centre “Kurchatov Institute”
Bibliography
1.Boikova, A.S., Dyakova, Y.A., Ilina, K.B., Konarev, P.V., Kryukova, A.E., Kuklin, A.I., Marchenkova, M.A., Nabatov, B.V., Blagov, A.E., Pisarevsky, Y.V., Kovalchuk, M.V. «Octamer formation in lysozyme solutions at the initial crystallization stage detected by small-angle neutron scattering» // (2017) Acta Crystallographica Section D: Structural Biology, 73 (7), pp. 591-599. DOI: 10.1107/S2059798317007422
2.Boikova, A.S., D’yakova, Y.A., Il’ina, K.B., Konarev, P.V., Kryukova, A.E., Marchenkova, M.A., Blagov, A.E., Pisarevskii, Y.V., Koval’chuk, M.V. «Small-angle X-ray scattering study of the influence of solvent replacement (from H2O to D2O) on the initial crystallization stage of tetragonal lysozyme» // (2017) Crystallography Reports, 62 (6), pp. 837-842. DOI: 10.1134/S1063774517060074
3.Popov, A.M., Boikova, A.S., Volkov, V.V., D’yakova, Y.A., Il’ina, K.B., Konarev, P.V., Marchenkova, M.A., Peters, G.S., Pisarevskii, Y.V., Koval’chuk, M.V. «Microfluidic Cell for Studying the Precrystallization Stage Structure of Protein Solutions by Small-Angle X-Ray Scattering» // (2018) Crystallography Reports, 63 (5), pp. 713-718. DOI: 10.1134/S1063774518050231
4.Boikova, A.S., D’yakova, Y.A., Il’ina, K.B., Konarev, P.V., Kryukova, A.E., Marchenkova, M.A., Pisarevskii, Y.V., Koval’chuk, M.V. «Investigation of the Pre-crystallization Stage of Proteinase K in Solution (Influence of Temperature and Precipitant Type) by Small-Angle X-Ray Scattering» // (2018) Crystallography Reports, 63 (6), pp. 865-870. DOI: 10.1134/S1063774518060068
5.Kovalchuk, M.V., Boikova, A.S., Dyakova, Y.A., Ilina, K.B., Konarev, P.V., Kryukova, A.E., Marchenkova, M.A., Pisarevsky, Y.V., Timofeev, V.I. «Pre-crystallization phase formation of thermolysin hexamers in solution close to crystallization conditions» // (2019) Journal of Biomolecular Structure and Dynamics, 37 (12), pp. 3058-3064. DOI: 10.1080/07391102.2018.1507839
6.Marchenkova, M.A., Konarev, P.V., Rakitina, T.V., Timofeev, V.I., Boikova, A.S., Dyakova, Y.A., Ilina, K.B., Korzhenevskiy, D.A., Yu Nikolaeva, A., Pisarevsky, Y.V., Kovalchuk, M.V. «Dodecamers derived from the crystal structure were found in the pre-crystallization solution of the transaminase from the thermophilic bacterium Thermobaculum terrenum by small-angle X-ray scattering» // (2019) Journal of Biomolecular Structure and Dynamics, in press. DOI: 10.1080/07391102.2019.1649195
7.Marchenkova, M.A., Kuranova, I.P., Timofeev, V.I., Boikova, A.S., Dorovatovskii, P.V., Dyakova, Y.A., Ilina, K.B., Pisarevskiy, Y.V., Kovalchuk, M.V. «The binding of precipitant ions in the tetragonal crystals of hen egg white lysozyme» // (2019) Journal of Biomolecular Structure and Dynamics, in press. DOI: 10.1080/07391102.2019.1696706
8.Dyakova, Y.A., Boikova, A.S., Ilina, K.B., Konarev, P.V., Marchenkova, M.A., Pisarevsky, Y.V., Timofeev, V.I., Kovalchuk, M.V. «Study of the Influence of a Precipitant Cation on the Formation of Oligomers in Crystallization Solutions of Lysozyme Protein» // (2019) Crystallography Reports, 64 (1), pp. 11-15. DOI: 10.1134/S1063774519010061
9.Kovalchuk, M.V., Boikova, A.S., Dyakova, Y.A., Ilina, K.B., Konarev, P.V., Marchenkova, M.A., Pisarevskiy, Y.V., Prosekov, P.A., Rogachev, A.V., Seregin, A.Y. «Structural characteristics of lysozyme Langmuir layers grown on a liquid surface from an oligomeric mixture formed during the early stages of lysozyme crystallization» // (2019) Thin Solid Films, 677, pp. 13-21. DOI: 10.1016/j.tsf.2019.02.051
ID: 437
/ Poster - 52 Time-resolved: 4
Bursary application
Oral/poster
MS: Time-resolved phase evolution, interaction & crystallization in soft matter: Integrative approaches, Structural bioinformaticsPosters only: Structure and phase transitions in advanced materialsKeywords: molecular dynamics; protein crystal growth
Study of the behaviour of lysozyme oligomers in solutions by the molecular dynamics method at different temperatures
Iuliia Vladimirovna Kordonskaia1,2, Vladimir Igorevich Timofeev1,2, Yulia Alekseevna Dyakova1,2, Margarita Aleksandrovna Marchenkova1,2, Yura Vladimirovich Pisarevskiy1,2, Mikhail Valentinovich Kovalchuk1,2
1National Research Center "Kurchatov Institute", Moscow, Russian Federation; 2Shubnikov Institute of Crystallography of Federal Scientific Research Centre “Crystallography and Photonics” of Russian Academy of Sciences
Bibliography
1. Yu. V. Kordonskaya, V. I. Timofeev, Yu. A. Dyakova, M. A. Marchenkova, Yu. V. Pisarevsky, D. D. Podshivalov, M. V. Kovalchuk. Study of the Behavior of Lysozyme Oligomers in Solutions by the Molecular Dynamics Method. Crystallography Reports. 2018. Vol. 63. № 6. P. 947-950. DOI: 10.1134/S1063774518060196.
2. Kordonskaya, Y. V., Marchenkova, M. A., Timofeev, V. I., Dyakova, Y. A., Pisarevsky, Y. V., & Kovalchuk, M. V. (2020). Precipitant ions influence on lysozyme oligomers stability investigated by molecular dynamics simulation at different temperatures. Journal of Biomolecular Structure and Dynamics, 1-8.
ID: 1246
/ Poster - 52 Time-resolved: 5
Methods and instruments
Oral/poster
MS: Time-resolved phase evolution, interaction & crystallization in soft matter: Integrative approachesKeywords: physical gel; X-ray scattering; rheology
Evolution of heterogeneity and gelation of poly(N‑isopropylacrylamide) aqueous solution at a temperature below cloud point
Atsuomi Shundo1, Takuro Kogo2, Chi Wang3, Keiji Tanaka1,2
1Department of Automotive Science, Kyushu University, Fukuoka, Japan; 2Department of Applied Chemistry, Kyushu University, Fukuoka, Japan; 3Department of Chemical Engineering, National Cheng Kung University, Tainan, Taiwan
ID: 1280
/ Poster - 52 Time-resolved: 6
All topics
Poster
MS: Time-resolved phase evolution, interaction & crystallization in soft matter: Integrative approachesPosters only: Macromolecular and biological crystallography (if it does not fit to any specific topics), General (if it does not fit to any specific topics nor areas)Keywords: PBTTT、intercalation、composite liquid crystals
Study on the intercalation of fullerene derivate into ordered phases liquid crystalline polymer
Chen-An Wang1,2, Jrjeng Ruan2, U-Ser Jeng1,3
1National Synchrotron Radiation Research Center (NSRRC), Hsinchu City, Taiwan; 2Department of Materials Science and Engineering, National Cheng Kung University, Tainan City, Taiwan; 3Department of Chemical Engineering, National Tsing Hua University, Hsinchu City , Taiwan
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