Conference Agenda

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Session Overview
Session
Poster - 52 Time-resolved: Time resolved phase evolution, interaction and crystallization in soft matter
Time:
Saturday, 21/Aug/2021:
5:10pm - 6:10pm

Session Chair: Jrjeng Ruan
Session Chair: Mitsuhiro Shibayama

 


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Presentations
ID: 1979 / Poster - 52 Time-resolved: 1
Poster session abstracts
Poster

Poster session abstracts

Radomír Kužel



ID: 452 / Poster - 52 Time-resolved: 2
Bursary application
Poster
MS: Time-resolved phase evolution, interaction & crystallization in soft matter: Integrative approaches
Posters only: Crystallographic analysis of films and surfaces
Keywords: Protein Crystallization, SAXS, SANS, Langmuir films, XSW

The organization of stable pre-crystallization phase from oligomers in lysozyme solution with different precipitates and the thin films formation at the air-liquid/air-substrate interfaces from the crystallization solutions

Margarita Marchenkova1, Kseniia Ilina1, Anastasiia Boikova1, Petr Konarev1, Alexey Seregin2, Yulia Dyakova2, Yury Pisarevskiy1, Mikhail Kovalchuk2

1Shubnikov Institute of Crystallography of Federal Scientific Research Centre “Crystallography and Photonics” of Russian Academy of Sciences; 2National Research Centre “Kurchatov Institute”

Bibliography
1.A.V. Kazak, M.A. Marchenkova, T.V. Dubinina, A.I. Smirnova, L.G. Tomilova, A.V. Rogachev, D.N. Chausov, A.A. Stsiapanau, N.V. Usol’tseva. Self-organization of octa-phenyl-2,3-naphthalocyaninato zinc floating layers. New journal of chemistry. 2020. Vol. 44. P. 3833-3837 (IF 3.069, DOI: 10.1039/C9NJ06041C, Q1)
2.A.V. Kazak, M.A. Marchenkova, A.I. Smirnova, A.Yu. Seregin, A.V. Rogachev, J. Warias, B. Murphy, E.Yu. Tereschenko, N.V. Usol’tseva. Floating layer structure of mesogenic phthalocyanine of A3B-type. Mendeleev communications. 2020. Vol. 30. № 2. P. 52-54 (IF 2.010, DOI: 10.1016/j.mencom.2020.01.017, Q2)
3.M.A. Marchenkova, I.P. Kuranova, V.I. Timofeev, A.S. Boikova, P.V. Dorovatovskii, Y.A. Dyakova, K.B. Ilina, Y.V. Pisarevskiy, M.V. Kovalchuk. The binding of precipitant ions in the tetragonal crystals of hen egg white lysozyme. Journal of Biomolecular Structure and Dynamics. 2019. Dec 6: 1-13 (IF 3.31 DOI: 10.1080/07391102.2019.1696706, Q2)
4.A. Smirnova, A. Kazak, M. Kovaleva, M. Marchenkova, A. Rogachev, D. N. Chausov, E. Glukhovskoy, N. Usol'tseva. BAM and GID structural investigation of 1,4,8,11,15,18-hexahexyloxy-22,23,24,25-tetrachlorophthalocyanine floating layers. Journal of Physics: Conference Series. 2019. Vol. 1309. P. 012023 (IF 0.69 DOI: 10.1088/1742-6596/1309/1/012024, Q3)
5.M.V. Kovalchuk, A.S. Boikova, Y.A. Dyakova, K.B. Ilina, P.V. Konarev, M.A. Marchenkova, P.A. Prosekov, A.V. Rogachev, A.Yu. Seregin. Structural characteristics of lysozyme Langmuir layers grown on a liquid surface from an oligomeric mixture formed in the early stages of lysozyme crystallization. Thin Solid Films. 2019. Vol. 677. P. 13-21 (IF 1.888, DOI: 10.1016/j.tsf.2019.02.051, Q2)
6.A.M. Popov, A.S. Boikova, V.V. Volkov, Yu.A. Dyakova, K.B. Ilina, P.V. Konarev, M.A. Marchenkova, G.S. Peters, Yu.V. Pisarevsky, M.V. Kovalchuk. Microfluidic Cell for Studying the Precrystallization Stage Structure of Protein Solutions by Small-Angle X-Ray Scattering. Crystallography Reports. 2018. Vol. 63. № 5. P. 713–718 (IF 0.751, DOI: 10.1134/S0023476118050235, Q2)
7.A.S. Boikova, Y.A. Dyakova, K.B. Ilina, P.V. Konarev, A.E. Kryukova, A.I. Kuklin, M.A. Marchenkova, B.V. Nabatov, A.E. Blagov, Y.V. Pisarevsky, M.V. Kovalchuk. Octamer formation in lysozyme solutions at the initial crystallization stage detected by small-angle neutron scattering. Acta Crystallographica Section D. 2017. D73. P. 591–599 (IF 3.227, DOI: 10.1107/S2059798317007422, Q1)
8.M.V. Kovalchuk, A.S. Boikova, Yu.A. Dyakova, M.A. Marchenkova, A.M. Opolchentsev, Yu.V. Pisarevsky, P.A. Prosekov, A.Yu. Seregin. Modification of the Langmuir–Schaefer Method for Fabrication of Ordered Protein Films. Crystallography Reports. 2017. Vol. 62. №4. P. 632–638 (IF 0.751, DOI: 10.1134/S1063774517040125, Q2)
9.M.V. Kovalchuk, A.E. Blagov, Y.A. Dyakova, A.Y. Gruzinov, M.A. Marchenkova, G.S. Peters, Y.V. Pisarevsky, V.I. Timofeev, V.V. Volkov. Investigation of the initial crystallization stage in lysozyme solutions by small-angle X-ray scattering. Crystal Growth & Design. 2016. Vol. 16. № 4. P. 1792-1797 (IF 4.153, DOI: 10.1021/acs.cgd.5b01662, Q1)
10.Y.A. Dyakova, M.A. Marchenkova, A.Y. Seregin, L.R. Imamova, E.Y. Tereschenko, V.V. Klechkovskaya, M.V. Kovalchuk, A.S. Alekseev. Orientation of donor-acceptor dyad molecules in Langmuir-Schaefer monolayers revealed by X-ray reflectometry. Mendeleev communications. 2016. Vol. 26. № 2. P. 149-151 (IF 2.010, DOI: 10.1016/j.mencom.2016.03.023, Q2)
11.А.V. Kazаk, N.V. Usol’tseva, A.I. Smirnova, Yu.А. Dyakova, М.А. Маrchenkova, B.V. Nabatov, Е.Yu. Tereschenko, I.V. Kholodkov. Optical properties and supramolecular organization of mix-substituted phthalocyanine holmium complex in Langmuir-Schaefer films. Macroheterocycles. 2015. Vol. 8. № 3. P. 284-289 (IF 1.086, DOI: 10.6060/mhc150972k, Q3)
12.M.A. Marchenkova, Y.A. Dyakova, E.Y. Tereschenko, M.V. Kovalchuk, Y.A. Vladimirov. The cytochrome c complexes with cardiolipin monolayer formed under different surface pressure. Langmuir. 2015. Vol. 31. № 45. P. 12426-12436 (IF 3.683, DOI: 10.1021/acs.langmuir.5b03155, Q1)
External Resource:
Video Link


ID: 454 / Poster - 52 Time-resolved: 3
Bursary application
Poster
MS: Time-resolved phase evolution, interaction & crystallization in soft matter: Integrative approaches
Posters only: Macromolecular and biological crystallography (if it does not fit to any specific topics)
Keywords: Protein Oligomers, Protein solution, Protein Crystallization, Crystal Growth, SAXS

The formation of pre-crystallization oligomers in protein solutions during crystal growth

Kseniia Ilina1, Anastasiia Boikova1, Margarita Marchenkova1, Yury Pisarevskiy1, Yuliia Dyakova2, Mikhail Kovalchuk2

1Shubnikov Institute of Crystallography of Federal Scientific Research Centre “Crystallography and Photonics” of Russian Academy of Sciences; 2National Research Centre “Kurchatov Institute”

Bibliography
1.Boikova, A.S., Dyakova, Y.A., Ilina, K.B., Konarev, P.V., Kryukova, A.E., Kuklin, A.I., Marchenkova, M.A., Nabatov, B.V., Blagov, A.E., Pisarevsky, Y.V., Kovalchuk, M.V. «Octamer formation in lysozyme solutions at the initial crystallization stage detected by small-angle neutron scattering» // (2017) Acta Crystallographica Section D: Structural Biology, 73 (7), pp. 591-599. DOI: 10.1107/S2059798317007422
2.Boikova, A.S., D’yakova, Y.A., Il’ina, K.B., Konarev, P.V., Kryukova, A.E., Marchenkova, M.A., Blagov, A.E., Pisarevskii, Y.V., Koval’chuk, M.V. «Small-angle X-ray scattering study of the influence of solvent replacement (from H2O to D2O) on the initial crystallization stage of tetragonal lysozyme» // (2017) Crystallography Reports, 62 (6), pp. 837-842. DOI: 10.1134/S1063774517060074
3.Popov, A.M., Boikova, A.S., Volkov, V.V., D’yakova, Y.A., Il’ina, K.B., Konarev, P.V., Marchenkova, M.A., Peters, G.S., Pisarevskii, Y.V., Koval’chuk, M.V. «Microfluidic Cell for Studying the Precrystallization Stage Structure of Protein Solutions by Small-Angle X-Ray Scattering» // (2018) Crystallography Reports, 63 (5), pp. 713-718. DOI: 10.1134/S1063774518050231
4.Boikova, A.S., D’yakova, Y.A., Il’ina, K.B., Konarev, P.V., Kryukova, A.E., Marchenkova, M.A., Pisarevskii, Y.V., Koval’chuk, M.V. «Investigation of the Pre-crystallization Stage of Proteinase K in Solution (Influence of Temperature and Precipitant Type) by Small-Angle X-Ray Scattering» // (2018) Crystallography Reports, 63 (6), pp. 865-870. DOI: 10.1134/S1063774518060068
5.Kovalchuk, M.V., Boikova, A.S., Dyakova, Y.A., Ilina, K.B., Konarev, P.V., Kryukova, A.E., Marchenkova, M.A., Pisarevsky, Y.V., Timofeev, V.I. «Pre-crystallization phase formation of thermolysin hexamers in solution close to crystallization conditions» // (2019) Journal of Biomolecular Structure and Dynamics, 37 (12), pp. 3058-3064. DOI: 10.1080/07391102.2018.1507839
6.Marchenkova, M.A., Konarev, P.V., Rakitina, T.V., Timofeev, V.I., Boikova, A.S., Dyakova, Y.A., Ilina, K.B., Korzhenevskiy, D.A., Yu Nikolaeva, A., Pisarevsky, Y.V., Kovalchuk, M.V. «Dodecamers derived from the crystal structure were found in the pre-crystallization solution of the transaminase from the thermophilic bacterium Thermobaculum terrenum by small-angle X-ray scattering» // (2019) Journal of Biomolecular Structure and Dynamics, in press. DOI: 10.1080/07391102.2019.1649195
7.Marchenkova, M.A., Kuranova, I.P., Timofeev, V.I., Boikova, A.S., Dorovatovskii, P.V., Dyakova, Y.A., Ilina, K.B., Pisarevskiy, Y.V., Kovalchuk, M.V. «The binding of precipitant ions in the tetragonal crystals of hen egg white lysozyme» // (2019) Journal of Biomolecular Structure and Dynamics, in press. DOI: 10.1080/07391102.2019.1696706
8.Dyakova, Y.A., Boikova, A.S., Ilina, K.B., Konarev, P.V., Marchenkova, M.A., Pisarevsky, Y.V., Timofeev, V.I., Kovalchuk, M.V. «Study of the Influence of a Precipitant Cation on the Formation of Oligomers in Crystallization Solutions of Lysozyme Protein» // (2019) Crystallography Reports, 64 (1), pp. 11-15. DOI: 10.1134/S1063774519010061
9.Kovalchuk, M.V., Boikova, A.S., Dyakova, Y.A., Ilina, K.B., Konarev, P.V., Marchenkova, M.A., Pisarevskiy, Y.V., Prosekov, P.A., Rogachev, A.V., Seregin, A.Y. «Structural characteristics of lysozyme Langmuir layers grown on a liquid surface from an oligomeric mixture formed during the early stages of lysozyme crystallization» // (2019) Thin Solid Films, 677, pp. 13-21. DOI: 10.1016/j.tsf.2019.02.051


ID: 437 / Poster - 52 Time-resolved: 4
Bursary application
Oral/poster
MS: Time-resolved phase evolution, interaction & crystallization in soft matter: Integrative approaches, Structural bioinformatics
Posters only: Structure and phase transitions in advanced materials
Keywords: molecular dynamics; protein crystal growth

Study of the behaviour of lysozyme oligomers in solutions by the molecular dynamics method at different temperatures

Iuliia Vladimirovna Kordonskaia1,2, Vladimir Igorevich Timofeev1,2, Yulia Alekseevna Dyakova1,2, Margarita Aleksandrovna Marchenkova1,2, Yura Vladimirovich Pisarevskiy1,2, Mikhail Valentinovich Kovalchuk1,2

1National Research Center "Kurchatov Institute", Moscow, Russian Federation; 2Shubnikov Institute of Crystallography of Federal Scientific Research Centre “Crystallography and Photonics” of Russian Academy of Sciences

Bibliography
1. Yu. V. Kordonskaya, V. I. Timofeev, Yu. A. Dyakova, M. A. Marchenkova, Yu. V. Pisarevsky, D. D. Podshivalov, M. V. Kovalchuk. Study of the Behavior of Lysozyme Oligomers in Solutions by the Molecular Dynamics Method. Crystallography Reports. 2018. Vol. 63. № 6. P. 947-950. DOI: 10.1134/S1063774518060196.

2. Kordonskaya, Y. V., Marchenkova, M. A., Timofeev, V. I., Dyakova, Y. A., Pisarevsky, Y. V., & Kovalchuk, M. V. (2020). Precipitant ions influence on lysozyme oligomers stability investigated by molecular dynamics simulation at different temperatures. Journal of Biomolecular Structure and Dynamics, 1-8.
External Resource:
Video Link


ID: 1246 / Poster - 52 Time-resolved: 5
Methods and instruments
Oral/poster
MS: Time-resolved phase evolution, interaction & crystallization in soft matter: Integrative approaches
Keywords: physical gel; X-ray scattering; rheology

Evolution of heterogeneity and gelation of poly(N‑isopropylacrylamide) aqueous solution at a temperature below cloud point

Atsuomi Shundo1, Takuro Kogo2, Chi Wang3, Keiji Tanaka1,2

1Department of Automotive Science, Kyushu University, Fukuoka, Japan; 2Department of Applied Chemistry, Kyushu University, Fukuoka, Japan; 3Department of Chemical Engineering, National Cheng Kung University, Tainan, Taiwan

External Resource:
Video Link


ID: 1280 / Poster - 52 Time-resolved: 6
All topics
Poster
MS: Time-resolved phase evolution, interaction & crystallization in soft matter: Integrative approaches
Posters only: Macromolecular and biological crystallography (if it does not fit to any specific topics), General (if it does not fit to any specific topics nor areas)
Keywords: PBTTT、intercalation、composite liquid crystals

Study on the intercalation of fullerene derivate into ordered phases liquid crystalline polymer

Chen-An Wang1,2, Jrjeng Ruan2, U-Ser Jeng1,3

1National Synchrotron Radiation Research Center (NSRRC), Hsinchu City, Taiwan; 2Department of Materials Science and Engineering, National Cheng Kung University, Tainan City, Taiwan; 3Department of Chemical Engineering, National Tsing Hua University, Hsinchu City , Taiwan

External Resource:
Video Link


 
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