Conference Agenda

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Session Overview
Session
TOM BioPhot S4: Imaging 2
Time:
Wednesday, 27/Aug/2025:
8:30am - 10:00am

Session Chair: Dimitrii Tanese, Vision Institute, France
Location: Senaatszaal


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Presentations
8:30am - 8:45am

Array of Quantum detectors for Deep Two-Photon Imaging of a Live Mouse Brain

Amr Tamimi1, Martin Caldarola2, Sebastian Hambura1, Juan Carlos Boffi1, Niels Noordzij2, Johannes W. N. Los2, Antonio Guardiani2, Hugo Kooiman2, Ling Wang1, Christian Kieser1, Florian Braun1, Mario A. Usuga Castaneda2, Andreas Fognini2, Robert Prevedel1

1Cell Biology and Biophysics Unit, European Molecular Biology Laboratory, Heidelberg, Germany; 2Single Quantum B.V., Rotterdamseweg 394, 2629 HH, Delft, The Netherlands.

We developed an array of quantum detectors based on superconducting nanowires to allow two-photon-excited fluorescence in-vivo imaging of mouse brain vasculature working completely in the short wave infrared (SWIR) region of the spectrum, achieving an imaging depth of up to 900 um.



8:45am - 9:00am

Optical trapping and swimming analysis of bacteria

Paul Schwermer1, Eric Faudry2, Jochen Fick1

1Institut Néel / CNRS, France; 2Institut de Biologie Structurale, France

Optical trapping with structured optical fibers is reported for five species of the Pseudomonas genus. Contactless trapping at low intensities was realized with 3D printed Fresnel lens fibers and an original fiber emitting a tightly focused annular beam. Specific swimming features and the behavior of trapped bacteria of the investigated species are compared applying different numerical methods.



9:00am - 9:15am

Modulating cell activity with light: in vitro evidence @420 nm

Giada Magni1, Martina Banchelli1, Federica Cherchi2, Anna Maria Pugliese2, Lucia Cavigli1, Francesca Rossi1

1CNR-IFAC, Italy; 2Università degli Studi di Firenze, Italy

Light-based technologies, including lasers and LEDs, are widely utilized in various medical applications. Among these, low-fluence and prolonged irradiation in the visible (VIS) and near-infrared (NIR) spectral regions have demonstrated significant clinical benefits, such as reducing inflammation and pain, as well as stimulating regenerative processes. To investigate the underlying mechanisms of these therapeutic effects, we examined the responses behaviour of fibroblasts and keratinocytes following non-contact irradiation with a 420 nm LED at varying fluences (4–40 J/cm²). Post-treatment analysis was conducted using confocal and electron microscopy, Micro-Raman spectroscopy, cell metabolism and proliferation assays, as well as patch-clamp recordings. Our findings revealed fluence- and cell type-dependent modulation of metabolism, cytochrome C redox state, and membrane ionic currents. In conclusion, these findings pave the way for the design of photonics-based medical devices capable of achieving targeted effects on specific cell groups, thereby addressing particular medical challenges [1-4].



9:15am - 9:30am

Hierarchical materials as tissue-like phantoms for photoacoustic imaging

Lucia Cavigli1, Sonia Centi1, Fulvio Ratto1, Francesca Rossi1, Stefano Pelli1, Daniele Farnesi1, Kristen M. Meiburger2, Bruna Cotrufo2, Silvia Seoni2, Roberto Maria Scardigno3, Andrea Guerriero3, Marilena Giglio4, Domenico Buongiorno3

1Cnr- Istituto di Fisica Applicata “Nello Carrara”, 50019 Sesto Fiorentino (FI), Italy; 2PolitoBIOMed Lab, Biolab, Dipartimento di Elettronica e Telecomunicazioni, Politecnico di Torino, 10129 Torino, Italy; 3Dipartimento di Ingegneria Elettrica e dell'Informazione, Polytechnic of Bari, Bari, Italy; 4PolySense Lab, Dipartimento Interateneo di Fisica, University and Polytechnic of Bari, Bari, Italy

Addressing the limitations of animal models in biomedical research, we introduce a hierarchical manufacturing method for creating anatomical phantoms using water-in-elastomer micro-emulsions.

The building blocks are water-in-elastomer micro-emulsions made of a continuous phase of hydrophobic polydimethylsiloxane (PDMS) and micro-droplets of hydrophilic solutions of various dyes and other contrast agents. This material inherits some properties from the elastomeric matrix, such as the speed of sound and acoustic attenuation coefficient, some from the hydrophilic inclusions, such as the optical absorbance, and some from their overall ultrastructure, such as the intensity of optical scattering. The final material

provides independently tunable, tissue-mimicking characteristics in the relevant ranges of optical excitation and acoustic detection for PAI.

This approach addresses the cost, ethical, and technical limitations of animal models, providing a reliable alternative for multimodal imaging and artificial intelligence development, particularly in photoacoustic imaging.



9:30am - 9:45am

Broadband multimode fiber compressive imaging

Jakub Kraciuk1, Aleksandra Ivanina1, Benjamin Lochocki1,2, Lyubov V. Amitonova1,3

1Nanoscale Imaging and Metrology group, Advanced Research Center for Nanolithography (ARCNL), Science Park 106, 1098XG Amsterdam, The Netherlands; 2Hamamatsu Photonics, Transistorstraat 7, 1322CJ Almere, The Netherlands; 3LaserLaB, Department of Physics and Astronomy, Vrije Universiteit Amsterdam, de Boelelaan 1081, 1081HV Amsterdam, The Netherlands

Reducing invasiveness is key in developing modern endoscopes for imaging samples in hard-to-reach areas. This can be achieved using multimode fibers. Compressive sensing algorithms can be applied to multimode fiber imaging to reduce the imaging speed. These algorithms utilize a sub-Nyquist set of patterns while allowing to super-resolve the sample. The patterns must be uncorrelated, which is typically achieved by mechanically scanning the input beam across a multimode fiber. We demonstrated a setup combining a super-continuum laser and a monochromator to obtain wavelength-dependent uncorrelated speckles, removing the need for mechanical scanning. With compressive sensing algorithms, binary samples were reconstructed up to 95% faster compared with traditional methods. We expand our setup to incorporate broadband illumination, which is expected to further increase imaging speed and spatial resolution, paving a way for a compact, real-time imaging device.



9:45am - 10:00am

Depth-resolved dynamics in turbid media via frequency-modulated scattering holography

Binbin Zhang, Sophinese Iskander-Rizk, Nandini Bhattacharya

Department of Precision and Microsystems Engineering, Delft University of Technology, Mekelweg 2, 2628 CD Delft, The Netherlands

Interferometric diffuse optics (iDO) enables non-invasive measurement of deep tissue blood flow without requiring photon-counting detectors. Due to hardware constraints, achieving both optical properties and depth-dependent dynamics within a single modality remains a challenge for iDO. We present a simple method based on frequency-modulated light scattering that overcomes this limitation.



 
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