Session | ||
Posters: Posters
| ||
Presentations | ||
Isolation and functional analysis of phage‐displayed antibody fragments targeting the staphylococcal superantigen‐like proteins 1Faculty of Sciences and Engineering, Pharmaceutical Sciences Laboratory (Pharmacy) & Structural Bioinformatics Laboratory (Biochemistry) Turku, Åbo Akademi University, Turku, Finland; 2Department of Life Technologies, University of Turku, Turku, Finland; 3Department of Medical Microbiology, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands Detailed analysis of a thermostable protein-DNA complex: the case of Sac7d as a prototype for protein-DNA interaction 1Nantes Université, US2B, CNRS, UMR6286 & Affilogic F-44000 Nantes, France; 2Affilogic SAS, F-44000 Nantes, France Method for analysis of protein-DNA interactions using probability density maps Institute of Biotechnology, Czech Academy of Science, Czech Republic Prediction of DNA hydration based on data mining of crystallographic structures Institute of Biotechnology, Czech Republic Conformational study of small carbon rings in ligands 1National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 753/5, 625 00 Brno, Czech Republic; 2CEITEC - Central European Institute of Technology, Masaryk University, Kamenice 753/5, 625 00 Brno, Czech Republic Predicting the effects of mutations on protein-protein interactions via self-supervised machine learning 1Czech Institute of Informatics, Robotics and Cybernetics, Czech Technical University in Prague; 2Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University; 3International Clinical Research Center, St. Anne's University Hospital Brno; 4Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences Mol*VS Visualization and Interpretation of Cell Imaging Data alongside Macromolecular Structure Data and Biological Annotations 1National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, 602 00, Czech Republic; 2Mol* Consortium - San Diego, CA, USA; 3CEITEC - Central European Institute of Technology, Masaryk University, Brno, 625 00, Czech Republic; 4Department of Physical Chemistry, Faculty of Science, Palacký University Olomouc, Olomouc, 779 00, Czech Republic Application and analysis of protein language models for predicting membrane interacting peptide regions 1Semmelweis University, Hungary; 2Eötvös Loránd University, Hungary; 3Eötvös Loránd Research Network, Hungary SpikePro: a webserver to predict the fitness of SARS-CoV-2 variants 1Computational Biology and Bioinformatics, Université Libre de Bruxelles, Brussels, Belgium; 2Interuniversity Institute of Bioinformatics in Brussels, Brussels, Belgium Extension of the SUGRES coarse-grained model of polysaccharides to heparin Department of Theoretical Chemistry, Faculty of Chemistry, University of Gdansk, Poland Mapping and characterization of the human missense variation universe using AlphaFold 3D models Imperial College London, United Kingdom Computational resources for analyzing transmembrane protein structures, and topology 1Research Centre for Natural Sciences, Magyar Tudosok Korutja, 1117-Budapest, Hungary; 2European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117-Heidelberg, Germany On modelling signalling amyloid motifs 1Katedra Inżynierii Biomedycznej, Wydział Podstawowych Problemów Techniki, Politechnika Wrocławska, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland; 2Katedra Chemii Bioorganicznej, Wydział Chemiczny, Politechnika Wrocławska, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland; 3Katedra Fizyki i Biofizyki, Wydział Biotechnologii i Nauk o Żywności, Uniwersytet Przyrodniczy we Wrocławiu, Norwida 25, 50-375 Wrocław, Poland AHoJ DB: A PDB-wide assignment of apo & holo relationships based on individual protein-ligand interactions 1Charles University, Faculty of Science, Department of Cell Biology, Czech Republic; 2Charles University, Faculty of Science, Department of Software Engineering, Czech Republic Toward a database of genetically encoded non-canonical amino acids 1Institute of Biotechnology of the Czech Academy of Sciences, Czech Republic; 2Instituto Politécnico de Setúbal, Escola Superior de Tecnologia de Barreiro, Portugal; 3University of Lausanne, Switzerland; 4SIB Swiss Institute of Bioinformatics Lausanne, Switzerland Valinomycin interactions with water 1Institute of Biotechnology, Academy of Sciences of the CR, Czech Republic; 2Institute of Physics, Academy of Sciences, Cukrovarnická 2, Praha, Czech Republic; 3Faculty of Science, Charles University, Hlavova 2030, Praha, Czech Republic; 4Institute of Macromol.Chemistry, Academy of Sciences, Heyrovského nám.2, Praha, Czech Republic AlphaMissense performance on transmembrane proteins 1Semmelweis University, Hungary; 2HUN-REN-SU Biophysical Virology Research Group Large-scale application of ProteinMPNN to design conformation-specific GPCR agonists Leipzig University, Germany Determining Structural Characteristics of Native and de novo Proteins for Improved Protein Design Algorithms Leipzig University, Germany Assessing the Effects of Mutations and Corrector Molecules on APOE Dynamics via Comparative Markov State Analysis 1Czech Institute of Informatics, Robotics and Cybernetics, Czech Technical University in Prague, Jugoslávských partyzánů 1580/3, 160 00 Prague, Czech Republic; 2Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic; 3International Clinical Research Center, St. Anne's University Hospital Brno, Pekařská 53, 656 91 Brno, Czech Republic E-pRSA: protein language models improve the prediction of residue solvent accessibility from sequence University of Bologna, Italy Proteome secondary structures generated by AlphaFold 1Department of Physical Chemistry, Faculty of Science, Palacký University Olomouc, tř. 17. listopadu 12, 77146 Olomouc, Czech Republic; 2CEITEC – Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic; 3National Centre for Biomolecular Research, Faculty of Science, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic Old folds can learn new tricks: Alphafold-driven insights on coiled-coil structure 1Max Planck Institute for Biology, Tuebingen, Germany; 2Institute of Evolutionary Biology, Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw, Warsaw, Poland; 3Prescient Design, Genentech Research & Early Development, Roche Group, Basel, Switzerland The Protein Universe Atlas 1Biozentrum, University of Basel, Basel, Switzerland; 2SIB Swiss Institute of Bioinformatics, University of Basel, Basel, Switzerland; 3Institute of Technology, University of Tartu, Tartu, Estonia; 4Department of Experimental Medical Science, Lund University, Lund, Sweden; 5VantAI, New York, USA; 6European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom; 7Science for Life Laboratory, Lund, Sweden; 8Virus Centre, Lund University, Lund, Sweden Exploring the relationship between structural quality and journal impact factor 1National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 753/5, 625 00 Brno, Czech Republic; 2CEITEC – Central European Institute of Technology, Masaryk University, Kamenice 753/5, 625 00 Brno, Czech Republic Towards finding high affinity binders of the PSB domain of human collagen prolyl 4-hydroxylase 1Faculty of Biochemistry and Molecular Medicine, University of Oulu, Oulu, Finland; 2Biocenter Oulu, University of Oulu, Oulu, Finland Onedata4Sci: Life-science experimental datasets management system 1National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 753/5, Brno, 625 00, Czech Republic; 2CEITEC - Central European Institute of Technology, Kamenice 753/5, Brno, 625 00, Czech Republic; 3Institute of Computer Science, Masaryk University, Sumavská 416/15, Brno, 602 00, Czech Republic The analysis of the Impact of Substitutions within EXO-Motifs on Hsa-MiR-1246 Intercellular Transfer in Breast Cancer Cells 1Institute of Computing Science, Poznan University of Technology, Poland; 2Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland; 3Department of Biochemistry and Molecular Biology, Poznan University of Medical Sciences, Poznan, Poland; 4Department of Biotechnology and Food Microbiology, Poznan University of Life Sciences, Poznan, Poland The hijacker of host immune system: Structural analysis of Klebsiella immune evasin A 11Structural Bioinformatics Laboratory and InFLAMES Research Flagship Center, Biochemistry, Faculty of Science and Engineering, Åbo Akademi University, Turku, Finland; 22Wellcome-Wolfson Institute for Experimental Medicine, School of Medicine, Dentistry and Biomedical Sciences, Queen's University Belfast, Belfast, UK ChannelsDB 2.0: A Comprehensive Database of Protein Tunnels and Pores in AlphaFold Era 1Department of Physical Chemistry, Faculty of Science, Palacký University, tř. 17. listopadu 12, 771 46 Olomouc, Czech Republic; 2Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic; 3International Clinical Research Center, St. Anne’s University Hospital Brno, Pekařská 53, 656 91 Brno, Czech Republic; 4CEITEC – Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic; 5National Centre for Biomolecular Research, Faculty of Science, Kamenice 5, 625 00 Brno, Czech Republic C-RCPred: a multi-objective algorithm for interactive secondary structure prediction of RNA complexes integrating user knowledge and SHAPE data Université Paris-Saclay / Univ. Evry, France Reusing and accessing computed structure models with SWISS-MODEL and ModelArchive 1Biozentrum, University of Basel, Basel, Switzerland; 2SIB Swiss Institute of Bioinformatics, University of Basel, Basel, Switzerland Protein folding enhanced by Adversarial Autoencoders 1Department of Biochemistry and Microbiology - University of Chemistry and Technology, Prague; 2Department of Machine Learning and Data Processing - Faculty of Informatics - Masaryk University, Brno LIGYSIS: a pipeline and web application for the analysis of ligand binding sites University of Dundee, United Kingdom Defining conformational states and their variability Interuniversity Institut of Bioinformatics in Brussels, Vrije Universiteit Brussel, Belgium Computational design of a cyclic peptide for inhibition of CD59 using hotspot extension in Rosetta 1Institute for Drug Discovery, Leipzig University Faculty of Medicine, Leipzig, Germany; 2School of Embedded Composite Artificial Intelligence (SECAI), Cooperation of University Leipzig and TU Dresden 3D-Bioinfo nucleic acid activity - a progress report Institute of Biotechnology of the Czech Academy of Sciences, Czech Republic Validation of nucleic acid valence geometry at dnatco.datmos.org Institute of Biotechnology of the Czech Academy of Sciences, Czech Republic Reference-free ranking method for RNA 3D models 1Poznan University of Technology, Poland; 2Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poland |