3D-BioInfo | ISCB 3D-SIG | ELIXIR Czech Republic
Structural Bioinformatics

November 15-17, 2023 | Prague, Czech Republic

Deadlines: for abstracts (posters) and registration - October 22, for online access - November 10

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Index of Authors

A list of all persons who contribute to the sessions of this conference. Please select a letter below to list all persons with the corresponding surname. Select the presentation in the right-hand column to access session and presentation details.

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List Options: Authors and Sessions · Authors and Sessions (Short Titles) · Authors and Presentations

Author(s)	Organization(s)	Contribution Title
S. Nair, Sreenath	Protein Data Bank in Europe, EMBL-EBI, Hinxton, United Kingdom	PDBe-KB in 2023: New data pipelines and improved functionality
S. Utgés, Javier	University of Dundee, United Kingdom	LIGYSIS: a pipeline and web application for the analysis of ligand binding sites Presenter
Sá-Pessoa, Joana	2Wellcome-Wolfson Institute for Experimental Medicine, School of Medicine, Dentistry and Biomedical Sciences, Queen's University Belfast, Belfast, UK	The hijacker of host immune system: Structural analysis of Klebsiella immune evasin A
Sabo, Jozef	CEITEC - Central European Institute of Technology, Kamenice 753/5, Brno, 625 00, Czech Republic; Institute of Computer Science, Masaryk University, Sumavská 416/15, Brno, 602 00, Czech Republic	Onedata4Sci: Life-science experimental datasets management system
Sagasta, Ander	Biozentrum, University of Basel, Switzerland; SIB Swiss Institute of Bioinformatics	Automated benchmarking of protein-ligand complex prediction
Salminen, Tiina, Annamaria	1Structural Bioinformatics Laboratory and InFLAMES Research Flagship Center, Biochemistry, Faculty of Science and Engineering, Åbo Akademi University, Turku, Finland; Åbo Akademi university, Finland	The hijacker of host immune system: Structural analysis of Klebsiella immune evasin A Presenter Design of novel peptides targeted to human primary amine oxidase
Salo, Antti M.	Faculty of Biochemistry and Molecular Medicine, University of Oulu, Oulu, Finland; Biocenter Oulu, University of Oulu, Oulu, Finland	Towards finding high affinity binders of the PSB domain of human collagen prolyl 4-hydroxylase
Salo-Ahen, Outi M. H.	Faculty of Sciences and Engineering, Pharmaceutical Sciences Laboratory (Pharmacy) & Structural Bioinformatics Laboratory (Biochemistry) Turku, Åbo Akademi University, Turku, Finland	Isolation and functional analysis of phage‐displayed antibody fragments targeting the staphylococcal superantigen‐like proteins
Samsonov, Sergey A.	Department of Theoretical Chemistry, Faculty of Chemistry, University of Gdansk, Poland	Extension of the SUGRES coarse-grained model of polysaccharides to heparin
Sandberg, Rebecca	Faculty of Sciences and Engineering, Pharmaceutical Sciences Laboratory (Pharmacy) & Structural Bioinformatics Laboratory (Biochemistry) Turku, Åbo Akademi University, Turku, Finland	Isolation and functional analysis of phage‐displayed antibody fragments targeting the staphylococcal superantigen‐like proteins
Sarzynska, Joanna	Institute of Bioorganic Chemistry PAS, Poland	Unraveling the RNA web: detecting and deciphering entanglements in 3D structures
Savojardo, Castrense	University of Bologna, Italy	E-pRSA: protein language models improve the prediction of residue solvent accessibility from sequence
Schindler, Ondřej	CEITEC and NCBR, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic	New ways of protein family visualization in AlphaFold era
Schneider, Bohdan	Institute of Biotechnology of the Czech Academy of Sciences, Czech Republic	3D-Bioinfo nucleic acid activity - a progress report Presenter Annotation, validation, refinement, and modeling of nucleic acid structures. Method for analysis of protein-DNA interactions using probability density maps Prediction of DNA hydration based on data mining of crystallographic structures Toward a database of genetically encoded non-canonical amino acids Validation of nucleic acid valence geometry at dnatco.datmos.org Welcome and organizational notes Presenter
Schneidman, Dina	The Hebrew University of Jerusalem, Israel	Datasets and models for modeling of antibody-antigen complexes Presenter
Schoeder, Clara Tabea	Leipzig University, Faculty of Medicine, Germany	Novel immunotherapeutic drugs through computational protein design Presenter
Schramlova, Barbora	Insitute of Biotechnology of the Czech Academy of Sciences, Czech Republic	Annotation, validation, refinement, and modeling of nucleic acid structures.
Schramlová, Barbora	Institute of Biotechnology of the Czech Academy of Sciences, Czech Republic	Validation of nucleic acid valence geometry at dnatco.datmos.org Presenter
Schreiber, Gideon	Weizmann Institute of Science, Israel	Protein Quaternary Structures in Solution are a Mixture of Multiple forms Presenter
Schwede, Torsten	Biozentrum, University of Basel, Switzerland; SIB Swiss Institute of Bioinformatics	Automated benchmarking of protein-ligand complex prediction Reusing and accessing computed structure models with SWISS-MODEL and ModelArchive The Protein Universe Atlas
Schweke, Hugo	Weizmann Institute of Science, Israel	An atlas of protein homo-oligomerization across domains of life Presenter
Sedlář, Jiří	Czech Institute of Informatics, Robotics and Cybernetics, Czech Technical University in Prague, Jugoslávských partyzánů 1580/3, 160 00 Prague, Czech Republic	Assessing the Effects of Mutations and Corrector Molecules on APOE Dynamics via Comparative Markov State Analysis
Sedlar, Jiri	Czech Institute of Informatics, Robotics and Cybernetics, Czech Technical University in Prague	Predicting the effects of mutations on protein-protein interactions via self-supervised machine learning
Sehnal, David	National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, 602 00, Czech Republic; CEITEC - Central European Institute of Technology, Masaryk University, Brno, 625 00, Czech Republic; National Centre for Biomolecular Research, Faculty of Science, Kamenice 5, 625 00 Brno, Czech Republic	Mol*VS Visualization and Interpretation of Cell Imaging Data alongside Macromolecular Structure Data and Biological Annotations ChannelsDB 2.0: A Comprehensive Database of Protein Tunnels and Pores in AlphaFold Era
Sieradzan, Adam K.	Department of Theoretical Chemistry, Faculty of Chemistry, University of Gdansk, Poland	Extension of the SUGRES coarse-grained model of polysaccharides to heparin
Šivic, Josef	Czech Institute of Informatics, Robotics and Cybernetics, Czech Technical University in Prague, Jugoslávských partyzánů 1580/3, 160 00 Prague, Czech Republic	Assessing the Effects of Mutations and Corrector Molecules on APOE Dynamics via Comparative Markov State Analysis
Sivic, Josef	Czech Institute of Informatics, Robotics and Cybernetics, Czech Technical University in Prague	Predicting the effects of mutations on protein-protein interactions via self-supervised machine learning
Skálová, Tereza	Institute of Biotechnology, Academy of Sciences of the CR, Czech Republic	Valinomycin interactions with water
Skerra, Arne	Technical University of Munich, Germany	Structural plasticity in the loop region of engineered lipocalins with novel ligand specificities – Anticalins Presenter
Skrinjar, Peter	Biozentrum, University of Basel, Switzerland; SIB Swiss Institute of Bioinformatics	Automated benchmarking of protein-ligand complex prediction
Špačková, Anna	Department of Physical Chemistry, Faculty of Science, Palacký University, tř. 17. listopadu 12, 771 46 Olomouc, Czech Republic	ChannelsDB 2.0: A Comprehensive Database of Protein Tunnels and Pores in AlphaFold Era Presenter
Spiwok, Vojtech	University of Chemistry and Technology, Prague, Czech Republic; Department of Biochemistry and Microbiology - University of Chemistry and Technology, Prague	Dynamics from Alphafold - Elastic network approach Presenter Jumpcount: Exact confidence intervals for free energy difference estimations Protein folding enhanced by Adversarial Autoencoders
Sternberg, Michael J.E.	Imperial College London, United Kingdom	Structure-based modelling of missense variants in the AlphaFold era Presenter Mapping and characterization of the human missense variation universe using AlphaFold 3D models
Stourac, Jan	Masaryk University, Czech Republic; St. Anne´s University Hospital Brno, Czech Republic	FireProt and FireProt-ASR – Web Tools for Computational Protein Stabilisation
Studer, Gabriel	Biozentrum, University of Basel, Basel, Switzerland; SIB Swiss Institute of Bioinformatics, University of Basel, Basel, Switzerland	Reusing and accessing computed structure models with SWISS-MODEL and ModelArchive The Protein Universe Atlas
Svoboda, Tomas	National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 753/5, Brno, 625 00, Czech Republic; CEITEC - Central European Institute of Technology, Kamenice 753/5, Brno, 625 00, Czech Republic; Institute of Computer Science, Masaryk University, Sumavská 416/15, Brno, 602 00, Czech Republic	Onedata4Sci: Life-science experimental datasets management system
Svobodová, Radka	CEITEC – Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic; National Centre for Biomolecular Research, Faculty of Science, Kamenice 5, 625 00 Brno, Czech Republic; National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, 602 00, Czech Republic; CEITEC and NCBR, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic	ChannelsDB 2.0: A Comprehensive Database of Protein Tunnels and Pores in AlphaFold Era Exploring the relationship between structural quality and journal impact factor Mol*VS Visualization and Interpretation of Cell Imaging Data alongside Macromolecular Structure Data and Biological Annotations New ways of protein family visualization in AlphaFold era Presenter
Svobodova, Radka	National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 753/5, Brno, 625 00, Czech Republic; CEITEC - Central European Institute of Technology, Kamenice 753/5, Brno, 625 00, Czech Republic	Onedata4Sci: Life-science experimental datasets management system
Svobodová, Radka	CEITEC – Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic; National Centre for Biomolecular Research, Faculty of Science, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic	Proteome secondary structures generated by AlphaFold Conformational study of small carbon rings in ligands
Sweeney, Blake	EMBL-EBI, United Kingdom	Rfam, RNA 3D structures, and issues facing RNA 3D structure prediction Presenter
Szachniuk, Marta	Poznan University of Technology, Poland; Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poland; Institute of Bioorganic Chemistry PAS, Poland	Reference-free ranking method for RNA 3D models Unraveling the RNA web: detecting and deciphering entanglements in 3D structures Presenter
Szefczyk, Monika	Katedra Chemii Bioorganicznej, Wydział Chemiczny, Politechnika Wrocławska, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland	On modelling signalling amyloid motifs
Szulc, Natalia	Katedra Inżynierii Biomedycznej, Wydział Podstawowych Problemów Techniki, Politechnika Wrocławska, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland; Katedra Fizyki i Biofizyki, Wydział Biotechnologii i Nauk o Żywności, Uniwersytet Przyrodniczy we Wrocławiu, Norwida 25, 50-375 Wrocław, Poland	On modelling signalling amyloid motifs

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3D-BioInfo | ISCB 3D-SIG | ELIXIR Czech Republic Structural Bioinformatics

November 15-17, 2023 | Prague, Czech Republic

Deadlines: for abstracts (posters) and registration - October 22, for online access - November 10

Index of Authors

3D-BioInfo | ISCB 3D-SIG | ELIXIR Czech Republic
Structural Bioinformatics