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S4: Activity 4 - To develop tools to Describe, Analyse, Annotate, and Predict Nucleic Acid Structures
Time:
Thursday, 16/Nov/2023:
9:30am - 11:30am
Session Chair: Bohdan Schneider
Location:Chamber Hall
PCC
Presentations
9:30am - 10:00am
RNA-Puzzles : Blind Assessments of (Semi)-Automatic 3D RNA Modeling
Eric Westhof1, Zhichao Miao2
1Architecture et Réactivité de l'ARN, Université de Strasbourg, Institut de biologie moléculaire et cellulaire du CNRS, 67000 Strasbourg France; 2GMU-GIBH Joint School of Life Sciences, Guangzhou Laboratory, Guangzhou Medical University, Guangzhou, China
External Resource:
10:00am - 10:30am
Rfam, RNA 3D structures, and issues facing RNA 3D structure prediction
Blake Sweeney
EMBL-EBI, United Kingdom
External Resource:
10:30am - 10:45am
Unraveling the RNA web: detecting and deciphering entanglements in 3D structures
Marta Szachniuk1,2, Maciej Antczak1,2, Mariusz Popenda2, Joanna Sarzynska2, Tomasz Zok1
1Poznan University of Technology, Poland; 2Institute of Bioorganic Chemistry PAS, Poland
External Resource:
10:45am - 11:00am
Posttranscriptional Modifications in RNA Experimental 3D Structures: Occurrences and Effect on Interbase Hydrogen Bonding
Mohit Chawla1, Luigi Cavallo1, Romina Oliva2
1King Abdullah University of Science and Technology (KAUST), Physical Sciences and Engineering Division, Kaust Catalysis Center, Thuwal 23955-6900, Saudi Arabia; 2Department of Sciences and Technologies, University Parthenope of Naples, Centro Direzionale Isola C4, I-80143 Naples, Italy
External Resource:
11:00am - 11:15am
RNAdvisor: Evaluation of RNA 3D structures with metrics and energies
